(1) LFAQ: towards unbiased label-free absolute protein quantification by predicting peptide quantitative factors, Analytical Chemistry, 2019, 通讯作者
(2) PTMiner: Localization and Quality Control of Protein Modifications Detected in an Open Search and Its Application to Comprehensive Post-translational Modification Characterization in Human Proteome, Molecular & Cellular Proteomics, 2019, 通讯作者
(3) GenTree, an integrated resource for analyzing the evolution and function of primate-specific coding genes, Genome Research, 2019, 其他(合作组作者)
(4) N-Linked Glycopeptide Identification Based on Open Mass Spectral Library Search, BioMed Research International, 2018, 通讯作者
(5) Quality control of single amino acid variations detected by tandem mass spectrometry, Journal of Proteomics, 2018, 通讯作者
(6) 基于质谱的蛋白质修饰定位算法, 生命的化学, 2017, 第 2 作者
(7) 中药整合药理学计算平台的开发与应用, 中国中药杂志, 2017, 第 3 作者
(8) Data Analysis Strategies for Protein Modification Identification, Methods in Molecular Biology, 2016, 第 1 作者
(9) 基于分子指纹的中药分子作用网络分析系统的研究与实现, 科研信息化技术与应用, 2016, 第 3 作者
(10) Mapping native disulfide bonds at a proteome scale, Nature Methods, 2015, 第 10 作者
(11) A Note on the False Discovery Rate of Novel Peptides in Proteogenomics, Bioinformatics, 2015, 第 2 作者
(12) Transferred Subgroup False Discovery Rate for Rare Post-translational Modifications Detected by Mass Spectrometry, Molecular Cellular Proteomics, 2014, 第 1 作者
(13) pQuant Improves Quantitation by Keeping out Interfering Signals and Evaluating the Accuracy of Calculated Ratios, Anal Chem, 2014, 第 4 作者
(14) Kernel Methods and Applications in Bioinformatics, Handbook of Bio-/Neuro-Informatic, 2013, 第 1 作者
(15) Bayesian false discovery rates for post-translational modification proteomics, Statistics and Its Interface, 2012, 第 1 作者
(16) DeltAMT: a statistical algorithm for fast detection of protein modifications from LC-MS/MS data, Molecular Cellular Proteomics, 2011, 第 1 作者
(17) Query-Adaptive Ranking with Support Vector Machines for Protein Homology Prediction, Lecture Notes in Bioinformatics, 2011, 第 1 作者
(18) Open MS/MS Spectral Library Search to Identify Unanticipated Post-Translational Modifications and Increase Spectral Identification Rate, Bioinformatics, 2010, 第 2 作者
(19) Efficient discovery of abundant post-translational modifications and spectral pairs using peptide mass and retention time differences, BMC Bioinformatics, 2009, 第 1 作者
(20) A strategy for precise and large-scale identification of core fucosylated glycoproteins, Molecular Cellular Proteomics, 2009, 第 3 作者
(21) Mining Tandem Mass Spectral Data to Develop a More Accurate Mass Error Model for Peptide Identification, Pacific Symposium on Biocomputing, 2007, 第 1 作者